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deseq2 output explained

Brave Beetle on Jul 01, 2020

Column  Description
1   Gene Identifiers
2   mean normalised counts, averaged over all samples from both conditions
3   the logarithm (to basis 2) of the fold change (See the note in inputs section)
4   standard error estimate for the log2 fold change estimate
5   Wald statistic
6   p value for the statistical significance of this change
7   p value adjusted for multiple testing with the Benjamini-Hochberg procedure which controls false discovery rate (FDR)

Source: biostar.galaxyproject.org

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"deseq2 output explained" Code Answer's