"resultsnames deseq2 on 3 conditions returns two" Code Answer's

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resultsnames deseq2 on 3 conditions returns two

Nasty Narwhal on Jun 09, 2020

BC <- results(dds, contrast=c("condition", "B", "C"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
BC <- lfcShrink(dds, contrast=c("condition", "B", "C"), res=BC)

BD <- results(dds, contrast=c("condition", "B", "D"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
BD <- lfcShrink(dds, contrast=c("condition", "B", "D"), res=BD)

BE <- results(dds, contrast=c("condition", "B", "E"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
BE <- lfcShrink(dds, contrast=c("condition", "B", "E"), res=BE)

CD <- results(dds, contrast=c("condition", "C", "D"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
CD <- lfcShrink(dds, contrast=c("condition", "C", "D"), res=CD)

CE <- results(dds, contrast=c("condition", "C", "E"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
CE <- lfcShrink(dds, contrast=c("condition", "C", "E"), res=CE)

DE <- results(dds, contrast=c("condition", "D", "E"), independentFiltering=TRUE, alpha=0.05, pAdjustMethod="BH", parallel=TRUE)
DE <- lfcShrink(dds, contrast=c("condition", "D", "E"), res=DE)

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"resultsnames deseq2 on 3 conditions returns two" Code Answer's