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from fasta to bed files

Sleepy Serval on Apr 14, 2020

samtools faidx $fasta
awk 'BEGIN {FS="\t"}; {print $1 FS "0" FS $2}' $fasta.fai > $fasta.bed

Source: bioinformatics.stackexchange.com

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"from fasta to bed files" Code Answer's